2020s

2022 2021 2020

2022

1. Single-cell RNA sequencing unravels heterogeneity of skeletal progenitors and cell-cell interactions underlying the bone repair process. Nakayama M, Okada H, Seki M, Suzuki Y, Chung UI, Ohba S, Hojo H. Regen Ther. 2022 May 18;21:9-18. doi: 10.1016/j.reth.2022.05.001. eCollection 2022 Dec. PMID: 35619947
2. Lack of Hikeshi activates HSF1 activity under normal conditions and disturbs the heat-shock response. Kose S, Imai K, Watanabe A, Nakai A, Suzuki Y, Imamoto N. Life Sci Alliance. 2022 May 17;5(9):e202101241. doi: 10.26508/lsa.202101241. Print 2022 Sep. PMID: 35580988
3. Intensive single-cell analysis reveals immune-cell diversity among healthy individuals. Kashima Y, Kaneko K, Reteng P, Yoshitake N, Runtuwene LR, Nagasawa S, Onishi M, Seki M, Suzuki A, Sugano S, Sakata-Yanagimoto M, Imai Y, Nakayama-Hosoya K, Kawana-Tachikawa A, Mizutani T, Suzuki Y. Life Sci Alliance. 2022 Apr 5;5(7):e202201398. doi: 10.26508/lsa.202201398. Print 2022 Jul. PMID: 35383111
4. The 3′ Pol II pausing at replication-dependent histone genes is regulated by Mediator through Cajal bodies’ association with histone locus bodies. Suzuki H, Abe R, Shimada M, Hirose T, Hirose H, Noguchi K, Ike Y, Yasui N, Furugori K, Yamaguchi Y, Toyoda A, Suzuki Y, Yamamoto T, Saitoh N, Sato S, Tomomori-Sato C, Conaway RC, Conaway JW, Takahashi H. Nat Commun. 2022 May 25;13(1):2905. doi: 10.1038/s41467-022-30632-w. PMID: 35614107
5. Differing impact of phosphoglycerate mutase 1-deficiency on brown and white adipose tissue. Yoshida Y, Shimizu I, Hsiao YT, Suda M, Katsuumi G, Seki M, Suzuki Y, Okuda S, Soga T, Minamino T. iScience. 2022 Apr 18;25(5):104268. doi: 10.1016/j.isci.2022.104268. eCollection 2022 May 20. PMID: 35521515
6. Multiomics identifies the link between intratumor steatosis and the exhausted tumor immune microenvironment in hepatocellular carcinoma. Murai H, Kodama T, Maesaka K, Tange S, Motooka D, Suzuki Y, Shigematsu Y, Inamura K, Mise Y, Saiura A, Ono Y, Takahashi Y, Kawasaki Y, Iino S, Kobayashi S, Idogawa M, Tokino T, Hashidate-Yoshida T, Shindou H, Miyazaki M, Imai Y, Tanaka S, Mita E, Ohkawa K, Hikita H, Sakamori R, Tatsumi T, Eguchi H, Morii E, Takehara T. Hepatology. 2022 May 14. doi: 10.1002/hep.32573. Online ahead of print. PMID: 3556754
7. Dengue fever as a reemerging disease in upper Egypt: Diagnosis, vector surveillance and genetic diversity using RT-LAMP assay. Gaber M, Ahmad AA, El-Kady AM, Tolba M, Suzuki Y, Mohammed SM, Elossily NA. PLoS One. 2022 May 2;17(5):e0265760. doi: 10.1371/journal.pone.0265760. eCollection 2022. PMID: 35499983
8. Oppositional poly(A) tail length regulation by FMRP and CPEB1. Shin J, Paek KY, Chikhaoui L, Jung S, Ponny S, Suzuki Y, Padmanabhan K, Richter JD. RNA. 2022 May;28(5):756-765. doi: 10.1261/rna.079050.121. Epub 2022 Feb 25. PMID: 35217597
9. Correlation Analysis between Gut Microbiota Alterations and the Cytokine Response in Patients with Coronavirus Disease during Hospitalization. Mizutani T, Ishizaka A, Koga M, Ikeuchi K, Saito M, Adachi E, Yamayoshi S, Iwatsuki-Horimoto K, Yasuhara A, Kiyono H, Matano T, Suzuki Y, Tsutsumi T, Kawaoka Y, Yotsuyanagi H. Microbiol Spectr. 2022 Apr 27;10(2):e0168921. doi: 10.1128/spectrum.01689-21. Epub 2022 Mar 7. PMID: 35254122
10. Shotgun metagenomic sequencing revealed the prebiotic potential of a grain-based diet in mice. Jangid A, Fukuda S, Suzuki Y, Taylor TD, Ohno H, Prakash T. Sci Rep. 2022 Apr 25;12(1):6748. doi: 10.1038/s41598-022-10762-3. PMID: 35468931
11. Glycoprotein nonmetastatic melanoma protein B regulates lysosomal integrity and lifespan of senescent cells. Suda M, Shimizu I, Katsuumi G, Hsiao CL, Yoshida Y, Matsumoto N, Yoshida Y, Katayama A, Wada J, Seki M, Suzuki Y, Okuda S, Ozaki K, Nakanishi-Matsui M, Minamino T. Sci Rep. 2022 Apr 20;12(1):6522. doi: 10.1038/s41598-022-10522-3. PMID: 35444208
12. OCT1-target neural gene PFN2 promotes tumor growth in androgen receptor-negative prostate cancer. Obinata D, Funakoshi D, Takayama K, Hara M, Niranjan B, Teng L, Lawrence MG, Taylor RA, Risbridger GP, Suzuki Y, Takahashi S, Inoue S. Sci Rep. 2022 Apr 12;12(1):6094. doi: 10.1038/s41598-022-10099-x. PMID: 35413990
13. Cyclin J-CDK complexes limit innate immune responses by reducing proinflammatory changes in macrophage metabolism. Chong YK, Tartey S, Yoshikawa Y, Imami K, Li S, Yoshinaga M, Hirabayashi A, Liu G, Vandenbon A, Hia F, Uehata T, Mino T, Suzuki Y, Noda T, Ferrandon D, Standley DM, Ishihama Y, Takeuchi O. Sci Signal. 2022 Apr 12;15(729):eabm5011. doi: 10.1126/scisignal.abm5011. Epub 2022 Apr 12. PMID: 35412849
14. Staphylococcus aureus utilizes environmental RNA as a building material in specific polysaccharide-dependent biofilms. Chiba A, Seki M, Suzuki Y, Kinjo Y, Mizunoe Y, Sugimoto S. NPJ Biofilms Microbiomes. 2022 Apr 4;8(1):17. doi: 10.1038/s41522-022-00278-z. PMID: 35379830
15. Retraction: Transcriptome analysis reveals a role for the endothelial ANP-GC-A signaling in interfering with pre-metastatic niche formation by solid cancers. Nojiri T, Arai M, Suzuki Y, Kumazoe M, Tokudome T, Miura K, Hino J, Hosoda H, Miyazato M, Okumura M, Kawaoka S, Kangawa K. Oncotarget. 2022 Mar 24;13:551-552. doi: 10.18632/oncotarget.28223. eCollection 2022. PMID: 35359748
16. Preoperative Chemoradiotherapy plus Nivolumab before Surgery in Patients with Microsatellite Stable and Microsatellite Instability-High Locally Advanced Rectal Cancer. Bando H, Tsukada Y, Inamori K, Togashi Y, Koyama S, Kotani D, Fukuoka S, Yuki S, Komatsu Y, Homma S, Taketomi A, Uemura M, Kato T, Fukui M, Wakabayashi M, Nakamura N, Kojima M, Kawachi H, Kirsch R, Yoshida T, Suzuki Y, Sato A, Nishikawa H, Ito M, Yoshino T. Clin Cancer Res. 2022 Mar 15;28(6):1136-1146. doi: 10.1158/1078-0432.CCR-21-3213. PMID: 35063964
17. Clonal Selection and Evolution of HTLV-1-Infected Cells Driven by Genetic and Epigenetic Alteration. Yamagishi M, Suzuki Y, Watanabe T, Uchimaru K. Viruses. 2022 Mar 12;14(3):587. doi: 10.3390/v14030587. PMID: 35336993
18. Efficient prediction of a spatial transcriptomics profile better characterizes breast cancer tissue sections without costly experimentation. Monjo T, Koido M, Nagasawa S, Suzuki Y, Kamatani Y. Sci Rep. 2022 Mar 8;12(1):4133. doi: 10.1038/s41598-022-07685-4. PMID: 35260632
19. Whole-genome Methylation Analysis of APOBEC Enzyme-converted DNA (~5 kb) by Nanopore Sequencing. Zaha S, Sakamoto Y, Nagasawa S, Sugano S, Suzuki A, Suzuki Y, Seki M. Bio Protoc. 2022 Mar 5;12(5):e4345. doi: 10.21769/BioProtoc.4345. eCollection 2022 Mar 5. PMID: 35592605
20. TSS-seq of Toxoplasma gondii sporozoites revealed a novel motif in stage-specific promoters. Kidaka T, Sugi T, Hayashida K, Suzuki Y, Xuan X, Dubey JP, Yamagishi J. Infect Genet Evol. 2022 Mar;98:105213. doi: 10.1016/j.meegid.2022.105213. Epub 2022 Jan 15. PMID: 35041968
21. Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney. Onoda N, Kawabata A, Hasegawa K, Sakakura M, Urakawa I, Seki M, Zenkoh J, Suzuki A, Suzuki Y. DNA Res. 2022 Feb 27;29(2):dsac007. doi: 10.1093/dnares/dsac007. PMID: 35325072
22. Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism. Uematsu S, Ohno S, Tanaka KY, Hatano A, Kokaji T, Ito Y, Kubota H, Hironaka KI, Suzuki Y, Matsumoto M, Nakayama KI, Hirayama A, Soga T, Kuroda S. iScience. 2022 Feb 4;25(2):103787. doi: 10.1016/j.isci.2022.103787. eCollection 2022 Feb 18. PMID: 35243212
23. Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing. Runtuwene LR, Sathirapongsasuti N, Srisawat R, Komalamisra N, Tuda JSB, Mongan AE, Aboge GO, Shabardina V, Makalowski W, Nesti DR, Artama WT, Nguyen-Thi LA, Wan KL, Na BK, Hall W, Pain A, Eshita Y, Maeda R, Yamagishi J, Suzuki Y. BMC Res Notes. 2022 Feb 12;15(1):44. doi: 10.1186/s13104-022-05927-2. PMID: 35151353
24. Impact of dietary fructooligosaccharides (FOS) on murine gut microbiota and intestinal IgA secretion. Jangid A, Fukuda S, Kato T, Seki M, Suzuki Y, Taylor TD, Ohno H, Prakash T. 3 Biotech. 2022 Feb;12(2):56. doi: 10.1007/s13205-022-03116-3. Epub 2022 Feb 2. PMID: 35186653
25. PD-1 blockade therapy promotes infiltration of tumor-attacking exhausted T cell clonotypes. Nagasaki J, Inozume T, Sax N, Ariyasu R, Ishikawa M, Yamashita K, Kawazu M, Ueno T, Irie T, Tanji E, Morinaga T, Honobe A, Ohnuma T, Yoshino M, Iwata T, Kawase K, Sasaki K, Hanazawa T, Kochin V, Kawamura T, Matsue H, Hino M, Mano H, Suzuki Y, Nishikawa H, Togashi Y. Cell Rep. 2022 Feb 1;38(5):110331. doi: 10.1016/j.celrep.2022.110331. PMID: 35108529
26. TUBB3 E410K Syndrome With Childhood-Onset Nonalcoholic Steatohepatitis. Mori J, Umemura A, Satake W, Cha PC, Suzuki Y, Itoh K, Chiyonobu T. J Clin Endocrinol Metab. 2022 Jan 1;107(1):e38-e43. doi: 10.1210/clinem/dgab628. PMID: 34435630
27. Bile acid dysmetabolism in the gut-microbiota-liver axis under hepatitis C virus infection. Inoue T, Funatsu Y, Ohnishi M, Isogawa M, Kawashima K, Tanaka M, Moriya K, Kawaratani H, Momoda R, Iio E, Nakagawa H, Suzuki Y, Matsuura K, Fujiwara K, Nakajima A, Yoshiji H, Nakayama J, Tanaka Y. Liver Int. 2022 Jan;42(1):124-134. doi: 10.1111/liv.15041. Epub 2021 Sep 5. PMID: 34411400

2021

1. HTLV-1 infection promotes excessive T cell activation and transformation into adult T cell leukemia/lymphoma. Tan BJ, Sugata K, Reda O, Matsuo M, Uchiyama K, Miyazato P, Hahaut V, Yamagishi M, Uchimaru K, Suzuki Y, Ueno T, Suzushima H, Katsuya H, Tokunaga M, Uchiyama Y, Nakamura H, Sueoka E, Utsunomiya A, Ono M, Satou Y. J Clin Invest. 2021 Dec 15;131(24):e150472. doi: 10.1172/JCI150472. PMID: 34907908
2. The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice. Taher L, Israel S, Drexler HCA, Makalowski W, Suzuki Y, Fuellen G, Boiani M. Sci Rep. 2021 Dec 9;11(1):23731. doi: 10.1038/s41598-021-03054-9. PMID: 34887460
3. IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells. Ando M, Magi S, Seki M, Suzuki Y, Kasukawa T, Lefaudeux D, Hoffmann A, Okada M. NPJ Syst Biol Appl. 2021 Dec 1;7(1):42. doi: 10.1038/s41540-021-00204-7. PMID: 34853340
4. Gene expression signatures as candidate biomarkers of response to PD-1 blockade in non- small cell lung cancers. Aiba T, Hattori C, Sugisaka J, Shimizu H, Ono H, Domeki Y, Saito R, Kawana S, Kawashima Y, Terayama K, Toi Y, Nakamura A, Yamanda S, Kimura Y, Suzuki Y, Niida A, Sugawara S. PLoS One. 2021 Nov 29;16(11):e0260500. doi: 10.1371/journal.pone.0260500. eCollection 2021. PMID: 34843570
5. Transcriptomic Analysis of the Effects of Chemokine Receptor CXCR3 Deficiency on Immune Responses in the Mouse Brain during Toxoplasma gondii Infection. Umeda K, Goto Y, Watanabe K, Ushio N, Fereig RM, Ihara F, Tanaka S, Suzuki Y, Nishikawa Y. Microorganisms. 2021 Nov 12;9(11):2340. doi: 10.3390/microorganisms9112340. PMID: 34835465
6. Cell cycle arrest determines adult neural stem cell ontogeny by an embryonic Notch- nonoscillatory Hey1 module. Harada Y, Yamada M, Imayoshi I, Kageyama R, Suzuki Y, Kuniya T, Furutachi S, Kawaguchi D, Gotoh Y. Nat Commun. 2021 Nov 12;12(1):6562. doi: 10.1038/s41467-021-26605-0. PMID: 34772946
7. TIGIT/CD155 axis mediates resistance to immunotherapy in patients with melanoma with the inflamed tumor microenvironment. Kawashima S, Inozume T, Kawazu M, Ueno T, Nagasaki J, Tanji E, Honobe A, Ohnuma T, Kawamura T, Umeda Y, Nakamura Y, Kawasaki T, Kiniwa Y, Yamasaki O, Fukushima S, Ikehara Y, Mano H, Suzuki Y, Nishikawa H, Matsue H, Togashi Y. J Immunother Cancer. 2021 Nov;9(11):e003134. doi: 10.1136/jitc-2021-003134. PMID: 34795004
8. The Evolving Genomic Landscape of Esophageal Squamous Cell Carcinoma Under Chemoradiotherapy. Hirata H, Niida A, Kakiuchi N, Uchi R, Sugimachi K, Masuda T, Saito T, Kageyama SI, Motomura Y, Ito S, Yoshitake T, Tsurumaru D, Nishimuta Y, Yokoyama A, Hasegawa T, Chiba K, Shiraishi Y, Du J, Miura F, Morita M, Toh Y, Hirakawa M, Shioyama Y, Ito T, Akimoto T, Miyano S, Shibata T, Mori M, Suzuki Y, Ogawa S, Ishigami K, Mimori K. Cancer Res. 2021 Oct 1;81(19):4926-4938. doi: 10.1158/0008-5472.CAN-21-0653. Epub 2021 Aug 19. PMID: 34413060
9. H3K4me3 histone modification in baculovirus-infected silkworm cells. Shoji K, Kokusho R, Kawamoto M, Suzuki Y, Katsuma S. Virus Genes. 2021 Oct;57(5):459-463. doi: 10.1007/s11262-021-01858-5. Epub 2021 Jun 29. PMID: 34185196
10. Cell shape-based chemical screening reveals an epigenetic network mediated by focal adhesions. Kanazawa T, Michida H, Uchino Y, Ishihara A, Zhang S, Tabata S, Suzuki Y, Imamoto A, Okada M. FEBS J. 2021 Oct;288(19):5613-5628. doi: 10.1111/febs.15840. Epub 2021 Apr 22. PMID: 33768715
11. A combination approach of pseudotime analysis and mathematical modeling for understanding drug-resistant mechanisms. Magi S, Ki S, Ukai M, Domínguez-Hüttinger E, Naito AT, Suzuki Y, Okada M. Sci Rep. 2021 Sep 16;11(1):18511. doi: 10.1038/s41598-021-97887-z. PMID: 34531471
12. Single-Cell Analyses Reveal Diverse Mechanisms of Resistance to EGFR Tyrosine Kinase Inhibitors in Lung Cancer. Kashima Y, Shibahara D, Suzuki A, Muto K, Kobayashi IS, Plotnick D, Udagawa H, Izumi H, Shibata Y, Tanaka K, Fujii M, Ohashi A, Seki M, Goto K, Tsuchihara K, Suzuki Y, Kobayashi SS. Cancer Res. 2021 Sep 15;81(18):4835-4848. doi: 10.1158/0008-5472.CAN-20-2811. Epub 2021 Jul 9. PMID: 34247147
13. Unique Gut Microbiome in HIV Patients on Antiretroviral Therapy (ART) Suggests Association with Chronic Inflammation. Ishizaka A, Koga M, Mizutani T, Parbie PK, Prawisuda D, Yusa N, Sedohara A, Kikuchi T, Ikeuchi K, Adachi E, Koibuchi T, Furukawa Y, Tojo A, Imoto S, Suzuki Y, Tsutsumi T, Kiyono H, Matano T, Yotsuyanagi H. Microbiol Spectr. 2021 Sep 3;9(1):e0070821. doi: 10.1128/Spectrum.00708-21. Epub 2021 Aug 11. PMID: 34378948
14. Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis. Yuasa H, Kajitani R, Nakamura Y, Takahashi K, Okuno M, Kobayashi F, Shinoda T, Toyoda A, Suzuki Y, Thongtham N, Forsman Z, Bronstein O, Seveso D, Montalbetti E, Taquet C, Eyal G, Yasuda N, Itoh T. DNA Res. 2021 Aug 25;28(4):dsab012. doi: 10.1093/dnares/dsab012. PMID: 34387305
15. Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing. Sakamoto Y, Zaha S, Nagasawa S, Miyake S, Kojima Y, Suzuki A, Suzuki Y, Seki M. Nucleic Acids Res. 2021 Aug 20;49(14):e81. doi: 10.1093/nar/gkab397. PMID: 34019650
16. Chronological genome and single-cell transcriptome integration characterizes the evolutionary process of adult T cell leukemia-lymphoma. Yamagishi M, Kubokawa M, Kuze Y, Suzuki A, Yokomizo A, Kobayashi S, Nakashima M, Makiyama J, Iwanaga M, Fukuda T, Watanabe T, Suzuki Y, Uchimaru K. Nat Commun. 2021 Aug 10;12(1):4821. doi: 10.1038/s41467-021-25101-9. PMID: 34376672
17. Predictive markers based on transcriptome modules for vinorelbine-based adjuvant chemotherapy for lung adenocarcinoma patients. Nakasone S, Suzuki A, Okazaki H, Onodera K, Zenkoh J, Ishii G, Suzuki Y, Tsuboi M, Tsuchihara K. Lung Cancer. 2021 Aug;158:115-125. doi: 10.1016/j.lungcan.2021.06.011. Epub 2021 Jun 10. PMID: 34157583
18. Application of long-read sequencing to the detection of structural variants in human cancer genomes. Sakamoto Y, Zaha S, Suzuki Y, Seki M, Suzuki A. Comput Struct Biotechnol J. 2021 Jul 28;19:4207-4216. doi: 10.1016/j.csbj.2021.07.030. eCollection 2021. PMID: 34527193
19. Single-cell and spatial analyses of cancer cells: toward elucidating the molecular mechanisms of clonal evolution and drug resistance acquisition. Nagasawa S, Kashima Y, Suzuki A, Suzuki Y. Inflamm Regen. 2021 Jul 16;41(1):22. doi: 10.1186/s41232-021-00170-x. PMID: 34271973
20. m6 A-mediated alternative splicing coupled with nonsense-mediated mRNA decay regulates SAM synthetase homeostasis. Watabe E, Togo-Ohno M, Ishigami Y, Wani S, Hirota K, Kimura-Asami M, Hasan S, Takei S, Fukamizu A, Suzuki Y, Suzuki T, Kuroyanagi H. EMBO J. 2021 Jul 15;40(14):e106434. doi: 10.15252/embj.2020106434. Epub 2021 Jun 21. PMID: 34152017
21. Targeting Epigenetic and Posttranscriptional Gene Regulation by PSF Impairs Hormone Therapy-Refractory Cancer Growth. Takayama KI, Honma T, Suzuki T, Kondoh Y, Osada H, Suzuki Y, Yoshida M, Inoue S. Cancer Res. 2021 Jul 1;81(13):3495-3508. doi: 10.1158/0008-5472.CAN-20-3819. Epub 2021 May 11. PMID: 33975881
22. Maintenance of neural stem-progenitor cells by the lysosomal biosynthesis regulators TFEB and TFE3 in the embryonic mouse telencephalon. Yuizumi N, Harada Y, Kuniya T, Sunabori T, Koike M, Wakabayashi M, Ishihama Y, Suzuki Y, Kawaguchi D, Gotoh Y. Stem Cells. 2021 Jul;39(7):929-944. doi: 10.1002/stem.3359. Epub 2021 Mar 10. PMID: 33609411
23. A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits. Hirakawa H, Toyoda A, Itoh T, Suzuki Y, Nagano AJ, Sugiyama S, Onodera Y. DNA Res. 2021 Jun 25;28(3):dsab004. doi: 10.1093/dnares/dsab004. PMID: 34142133
24. Subtype-specific collaborative transcription factor networks are promoted by OCT4 in the progression of prostate cancer. Takayama KI, Kosaka T, Suzuki T, Hongo H, Oya M, Fujimura T, Suzuki Y, Inoue S. Nat Commun. 2021 Jun 18;12(1):3766. doi: 10.1038/s41467-021-23974-4. PMID: 34145268
25. Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan. Yoshitake K, Kimura G, Sakami T, Watanabe T, Taniuchi Y, Kakehi S, Kuwata A, Yamaguchi H, Kataoka T, Kawachi M, Ikeo K, Tan E, Igarashi Y, Ohtsubo M, Watabe S, Suzuki Y, Asakawa S, Ishino S, Tashiro K, Ishino Y, Kobayashi T, Mineta K, Gojobori T. Sci Rep. 2021 Jun 9;11(1):12222. doi: 10.1038/s41598-021-91615-3. PMID: 34108585
26. Characterization of Histone H3 Lysine 4 and 36 Tri-methylation in Brassica rapa L. Mehraj H, Takahashi S, Miyaji N, Akter A, Suzuki Y, Seki M, Dennis ES, Fujimoto R. Front Plant Sci. 2021 Jun 7;12:659634. doi: 10.3389/fpls.2021.659634. eCollection 2021. PMID: 34163501
27. Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants. Shirai K, Sato MP, Nishi R, Seki M, Suzuki Y, Hanada K. Genome Res. 2021 Jun;31(6):1060-1068. doi: 10.1101/gr.271726.120. Epub 2021 May 18. PMID: 34006571
28. Interleukin-6 sensitizes TNF-α and TRAIL/Apo2L dependent cell death through upregulation of death receptors in human cancer cells. Sano E, Kazaana A, Tadakuma H, Takei T, Yoshimura S, Hanashima Y, Ozawa Y, Yoshino A, Suzuki Y, Ueda T. Biochim Biophys Acta Mol Cell Res. 2021 Jun;1868(7):119037. doi: 10.1016/j.bbamcr.2021.119037. Epub 2021 Apr 9. PMID: 33839168
29. A single m6A modification in U6 snRNA diversifies exon sequence at the 5′ splice site. Ishigami Y, Ohira T, Isokawa Y, Suzuki Y, Suzuki T. Nat Commun. 2021 May 28;12(1):3244. doi: 10.1038/s41467-021-23457-6. PMID: 34050143
30. Importance of lymph node immune responses in MSI-H/dMMR colorectal cancer. Inamori K, Togashi Y, Fukuoka S, Akagi K, Ogasawara K, Irie T, Motooka D, Kobayashi Y, Sugiyama D, Kojima M, Shiiya N, Nakamura S, Maruyama S, Suzuki Y, Ito M, Nishikawa H. JCI Insight. 2021 May 10;6(9):e137365. doi: 10.1172/jci.insight.137365. PMID: 33755600
31. Setd1a Plays Pivotal Roles for the Survival and Proliferation of Retinal Progenitors via Histone Modifications of Uhrf1. Deng X, Iwagawa T, Fukushima M, Suzuki Y, Watanabe S. Invest Ophthalmol Vis Sci. 2021 May 3;62(6):1. doi: 10.1167/iovs.62.6.1. PMID: 33938913
32. Identification of novel heat shock-induced long non-coding RNA in human cells. Onoguchi-Mizutani R, Kishi Y, Ogura Y, Nishimura Y, Imamachi N, Suzuki Y, Miyazaki S, Akimitsu N. J Biochem. 2021 Apr 29;169(4):497-505. doi: 10.1093/jb/mvaa126. PMID: 33170212
33. Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus. Maeda T, Takahashi S, Yoshida T, Shimamura S, Takaki Y, Nagai Y, Toyoda A, Suzuki Y, Arimoto A, Ishii H, Satoh N, Nishiyama T, Hasebe M, Maruyama T, Minagawa J, Obokata J, Shigenobu S. Elife. 2021 Apr 27;10:e60176. doi: 10.7554/eLife.60176. PMID: 33902812
34. Tsga8 is required for spermatid morphogenesis and male fertility in mice. Kobayashi Y, Tomizawa SI, Ono M, Kuroha K, Minamizawa K, Natsume K, Dizdarević S, Dočkal I, Tanaka H, Kawagoe T, Seki M, Suzuki Y, Ogonuki N, Inoue K, Matoba S, Anastassiadis K, Mizuki N, Ogura A, Ohbo K. Development. 2021 Apr 15;148(8):dev196212. doi: 10.1242/dev.196212. Epub 2021 Apr 26. PMID: 33766931
35. Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer. Okamoto T, duVerle D, Yaginuma K, Natsume Y, Yamanaka H, Kusama D, Fukuda M, Yamamoto M, Perraudeau F, Srivastava U, Kashima Y, Suzuki A, Kuze Y, Takahashi Y, Ueno M, Sakai Y, Noda T, Tsuda K, Suzuki Y, Nagayama S, Yao R. Stem Cell Reports. 2021 Apr 13;16(4):954-967. doi: 10.1016/j.stemcr.2021.02.012. Epub 2021 Mar 11. PMID: 33711267
36. Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast. Nagasawa S, Kuze Y, Maeda I, Kojima Y, Motoyoshi A, Onishi T, Iwatani T, Yokoe T, Koike J, Chosokabe M, Kubota M, Seino H, Suzuki A, Seki M, Tsuchihara K, Inoue E, Tsugawa K, Ohta T, Suzuki Y. Commun Biol. 2021 Apr 1;4(1):438. doi: 10.1038/s42003-021-01959-9. PMID: 33795819
37. Identification of deleterious recessive haplotypes and candidate deleterious recessive mutations in Japanese Black cattle. Sasaki S, Watanabe T, Ibi T, Hasegawa K, Sakamoto Y, Moriwaki S, Kurogi K, Ogino A, Yasumori T, Wakaguri H, Muraki E, Miki Y, Yoshida Y, Inoue Y, Tabuchi I, Iwao K, Arishima T, Kawashima K, Watanabe M, Sugano S, Sugimoto Y, Suzuki Y. Sci Rep. 2021 Mar 23;11(1):6687. doi: 10.1038/s41598-021-86225-y. PMID: 33758295
38. Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle. Egami R, Kokaji T, Hatano A, Yugi K, Eto M, Morita K, Ohno S, Fujii M, Hironaka KI, Uematsu S, Terakawa A, Bai Y, Pan Y, Tsuchiya T, Ozaki H, Inoue H, Uda S, Kubota H, Suzuki Y, Matsumoto M, Nakayama KI, Hirayama A, Soga T, Kuroda S. iScience. 2021 Feb 20;24(3):102217. doi: 10.1016/j.isci.2021.102217. eCollection 2021 Mar 19. PMID: 33748705
39. Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by regnase-1. Nakatsuka Y, Yaku A, Handa T, Vandenbon A, Hikichi Y, Motomura Y, Sato A, Yoshinaga M, Tanizawa K, Watanabe K, Hirai T, Chin K, Suzuki Y, Uehata T, Mino T, Tsujimura T, Moro K, Takeuchi O. Eur Respir J. 2021 Mar 11;57(3):2000018. doi: 10.1183/13993003.00018-2020. Print 2021 Mar. PMID: 32978308
40. MCM10 compensates for Myc-induced DNA replication stress in breast cancer stem-like cells. Murayama T, Takeuchi Y, Yamawaki K, Natsume T, Li M, Marcela RN, Nishimura T, Kogure Y, Nakata A, Tominaga K, Sasahara A, Yano M, Ishikawa S, Ohta T, Ikeda K, Horie-Inoue K, Inoue S, Seki M, Suzuki Y, Sugano S, Enomoto T, Tanabe M, Tada KI, Kanemaki MT, Okamoto K, Tojo A, Gotoh N. Cancer Sci. 2021 Mar;112(3):1209-1224. doi: 10.1111/cas.14776. Epub 2021 Jan 22. PMID: 33340428
41. A 44-kb deleted-type copy number variation is associated with decreasing complement component activity and calf mortality in Japanese Black cattle. Sasaki S, Miki Y, Ibi T, Wakaguri H, Yoshida Y, Sugimoto Y, Suzuki Y. BMC Genomics. 2021 Feb 6;22(1):107. doi: 10.1186/s12864-021-07415-6. PMID: 33549039
42. CRISPR/Cas9-mediated mutagenesis of Ago2 and Siwi in silkworm cultured cells. Katsuma S, Shoji K, Suzuki Y, Kiuchi T. Gene. 2021 Feb 5;768:145314. doi: 10.1016/j.gene.2020.145314. Epub 2020 Nov 18. PMID: 33220342
43. DOCK11 and DENND2A play pivotal roles in the maintenance of hepatitis B virus in host cells. Hashimoto S, Shirasaki T, Yamashita T, Iwabuchi S, Suzuki Y, Takamura Y, Ukita Y, Deshimaru S, Okayama T, Ikeo K, Kuroki K, Kawaguchi K, Mizukoshi E, Matsushima K, Honda M, Kaneko S. PLoS One. 2021 Feb 4;16(2):e0246313. doi: 10.1371/journal.pone.0246313. eCollection 2021. PMID: 33539396
44. Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition. Kanagaki S, Ikeo S, Suezawa T, Yamamoto Y, Seki M, Hirai T, Hagiwara M, Suzuki Y, Gotoh S. Stem Cells. 2021 Feb;39(2):156-169. doi: 10.1002/stem.3302. Epub 2020 Nov 26. PMID: 33241896
45. Potential for small RNA production against Bombyx mori latent virus in Bombyx mori ovaries. Katsuma S, Shoji K, Suzuki Y, Iwanaga M. Arch Insect Biochem Physiol. 2021 Feb;106(2):e21761. doi: 10.1002/arch.21761. Epub 2020 Nov 22. PMID: 33225529
46. Impaired tumor immune response in metastatic tumors is a selective pressure for neutral evolution in CRC cases. Sakimura S, Nagayama S, Fukunaga M, Hu Q, Kitagawa A, Kobayashi Y, Hasegawa T, Noda M, Kouyama Y, Shimizu D, Saito T, Niida A, Tsuruda Y, Otsu H, Matsumoto Y, Uchida H, Masuda T, Sugimachi K, Sasaki S, Yamada K, Takahashi K, Innan H, Suzuki Y, Nakamura H, Totoki Y, Mizuno S, Ohshima M, Shibata T, Mimori K. PLoS Genet. 2021 Jan 21;17(1):e1009113. doi: 10.1371/journal.pgen.1009113. eCollection 2021 Jan. PMID: 33476333
47. Genome assembly and annotation of the California harvester ant Pogonomyrmex californicus. Bohn J, Halabian R, Schrader L, Shabardina V, Steffen R, Suzuki Y, Ernst UR, Gadau J, Makałowski W. G3 (Bethesda). 2021 Jan 18;11(1):jkaa019. doi: 10.1093/g3journal/jkaa019. PMID: 33561225
48. E74-Like Factor 3 Is a Key Regulator of Epithelial Integrity and Immune Response Genes in Biliary Tract Cancer. Suzuki M, Saito-Adachi M, Arai Y, Fujiwara Y, Takai E, Shibata S, Seki M, Rokutan H, Maeda D, Horie M, Suzuki Y, Shibata T, Kiyono T, Yachida S. Cancer Res. 2021 Jan 15;81(2):489-500. doi: 10.1158/0008-5472.CAN-19-2988. Epub 2020 Dec 8. PMID: 33293429
49. Potentiality of multiple modalities for single-cell analyses to evaluate the tumor microenvironment in clinical specimens. Kashima Y, Togashi Y, Fukuoka S, Kamada T, Irie T, Suzuki A, Nakamura Y, Shitara K, Minamide T, Yoshida T, Taoka N, Kawase T, Wada T, Inaki K, Chihara M, Ebisuno Y, Tsukamoto S, Fujii R, Ohashi A, Suzuki Y, Tsuchihara K, Nishikawa H, Doi T. Sci Rep. 2021 Jan 11;11(1):341. doi: 10.1038/s41598-020-79385-w. PMID: 33431933
50. Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria. Yahara K, Suzuki M, Hirabayashi A, Suda W, Hattori M, Suzuki Y, Okazaki Y. Nat Commun. 2021 Jan 4;12(1):27. doi: 10.1038/s41467-020-20199-9. PMID: 33397904
51. Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. Oka M, Xu L, Suzuki T, Yoshikawa T, Sakamoto H, Uemura H, Yoshizawa AC, Suzuki Y, Nakatsura T, Ishihama Y, Suzuki A, Seki M. Genome Biol. 2021 Jan 4;22(1):9. doi: 10.1186/s13059-020-02240-8. PMID: 33397462
52. Transcript Identification Through Long-Read Sequencing. Seki M, Oka M, Xu L, Suzuki A, Suzuki Y. Methods Mol Biol. 2021;2284:531-541. doi: 10.1007/978-1-0716-1307-8_29. PMID: 33835462
53. The genome sequence of Samia ricini, a new model species of lepidopteran insect. Lee J, Nishiyama T, Shigenobu S, Yamaguchi K, Suzuki Y, Shimada T, Katsuma S, Kiuchi T. Mol Ecol Resour. 2021 Jan;21(1):327-339. doi: 10.1111/1755-0998.13259. Epub 2020 Oct 16. PMID: 32985129

2020

英語論文

1. Mitobe Y, Iino K, Takayama KI, Ikeda K, Suzuki T, Aogi K, Kawabata H, Suzuki Y, Horie-Inoue K, Inoue S.
   PSF promotes ER-positive breast cancer progression via posttranscriptional regulation of ESR1 and SCFD2.
   Cancer Res. 2020 Mar 25:canres.3095.2019. doi: 10.1158/0008-5472.CAN-19-3095.
2. Jangid A, Fukuda S, Seki M, Horiuchi T, Suzuki Y, Taylor TD, Ohno H, Prakash T.
   Association of colitis with gut-microbiota dysbiosis in clathrin adapter AP-1B knockout mice.
   PLoS One. 2020 Mar 24;15(3):e0228358. doi: 10.1371/journal.pone.0228358. eCollection 2020.
3. Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y,
   Takigawa I, Tsukiyama T,Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y,
   Matsumoto M, Nakayama KI, Washburn MP, Saraf A, Florens L, Sato S,
   The role of Mediator and Little Elongation Complex in transcription termination.
   Tomomori-Sato C, Conaway RC, Conaway JW, Hatakeyama S.
4. Imamoto A, Ki S, Li L, Iwamoto K, Maruthamuthu V, Devany J, Lu O, Kanazawa T, Zhang S, Yamada T, Hirayama A, Fukuda S,
   Suzuki Y, Okada M.,Essential role of the Crk family-dosage in DiGeorge-like anomaly and metabolic homeostasis.
   Life Sci Alliance. 2020 Feb 10;3(2). pii: e201900635. doi: 10.26508/lsa.201900635. Print 2020 Feb.
5. Ozawa Y, Yamamuro S, Sano E, Tatsuoka J, Hanashima Y, Yoshimura S, Sumi K, Hara H, Nakayama T, Suzuki Y, Yoshino A.
   Indoleamine 2,3-dioxygenase 1 is highly expressed in glioma stem cells.
   Biochem Biophys Res Commun. 2020 Feb 5. pii: S0006-291X(20)30231-X. doi: 10.1016/j.bbrc.2020.01.148. [Epub ahead of print]
6. Izumi N, Shoji K, Suzuki Y, Katsuma S, Tomari Y.
   Zucchini consensus motifs determine the mechanism of pre-piRNA production.
   Nature. 2020 Feb;578(7794):311-316. doi: 10.1038/s41586-020-1966-9. Epub 2020 Jan 29.
7. Fujimoto S, Kawamoto M, Shoji K, Suzuki Y, Katsuma S, Iwanaga M.
   Whole-genome sequencing and comparative transcriptome analysis of Bombyx mori nucleopolyhedrovirus La strain.
   Virus Genes. 2020 Jan 7. doi: 10.1007/s11262-019-01727-2. [Epub ahead of print]
8. Suzuki Y.
   Advent of a new sequencing era: long-read and on-site sequencing.
   J Hum Genet. 2020 Jan;65(1):1. doi: 10.1038/s10038-019-0683-4. Epub 2020 Jan 6. No abstract available.
9. Shabardina V, Kashima Y, Suzuki Y, Makalowski W.
   Emergence and Evolution of ERM Proteins and Merlin in Metazoans.
   Genome Biol Evol. 2020 Jan 1;12(1):3710-3724. doi: 10.1093/gbe/evz265